Index

A

alignment_NCC() (in module exr.align.align_utils)

C

calculate_alignment_evaluation_ci() (in module exr.align.align_eval) calculate_volume_and_surface_area() (in module exr.utils.utils) chmod() (in module exr.utils.utils)

Config (class in exr.config) configure_logger() (in module exr.utils.log) create_directory_structure() (exr.config.Config method) create_folder_structure() (in module exr.io.io)

E

execute_volumetric_alignment() (in module exr.align.align) execute_volumetric_alignment_bigstream() (in module exr.align.align) exr.align.align module exr.align.align_eval module exr.align.align_utils module exr.analysis.analysis module

exr.io.io module exr.segmentation.segmentation module exr.utils.log module exr.utils.utils module extract_synapse_coordinates() (in module exr.analysis.analysis)

L

load_config() (exr.config.Config method)

load_json() (in module exr.io.io)

M

measure_round_alignment_NCC() (in module exr.align.align_eval) measure_synapse_properties() (in module exr.analysis.analysis) measure_synapse_properties_pairwise() (in module exr.analysis.analysis) module exr.align.align exr.align.align_eval exr.align.align_utils exr.analysis.analysis exr.io.io exr.segmentation.segmentation exr.utils.log exr.utils.utils

N

nd2ToVol() (in module exr.io.io)

P

plot_alignment_evaluation() (in module exr.align.align_eval)

print() (exr.config.Config method)

S

save_config() (exr.config.Config method) save_json() (in module exr.io.io) set_config() (exr.config.Config method)

set_permissions() (exr.config.Config method) subtract_background_rolling_ball() (in module exr.utils.utils) subtract_background_top_hat() (in module exr.utils.utils) synapses_roi_segmentation() (in module exr.segmentation.segmentation)

T

template_matching() (in module exr.align.align_utils)

transform_ref_round() (in module exr.align.align)

V

volumetric_alignment() (in module exr.align.align)